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GSC MIxS packages for genomes, metagenomes, and marker sequences More...
$ {$ r4 A9 z8 V, TMIGS Cultured Bacterial/Archaeal0 c \0 Q! r' Q
Use for cultured bacterial or archaeal genomic sequences. Organism must have lineage Bacteria or Archaea.( G7 A/ S: x; F
' S. C$ Z# J6 @5 B: V; ^; h- [& KMIGS Eukaryotic
) Q2 M$ I5 ~+ c: ^: P& q2 b t% r' PUse for eukaryotic genomic sequences. Organism must have lineage Eukaryota.% O1 [, n$ b4 S) H* n
2 y. P2 F$ M1 Q+ v0 E
MIGS Viral) d+ C& N2 n( H# T# K* G
Use for virus genomic sequences. Organism must have lineage Viruses.
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MIMAG Metagenome-assembled Genome6 b: V- C% s: z" K$ R! W8 x
Use for metagenome-assembled genome sequences produced using computational binning tools that group sequences into individual organism genome assemblies starting from metagenomic data sets. Organism cannot contain the term 'metagenome'. Use the MIUVIG package for virus genomes.; m9 p5 v g" u( E1 X: ]
0 w9 A3 M: v$ Q5 C3 L, fMIMARKS Specimen
1 A% o$ Y F: [9 Q1 q- c( ]Use for any type of marker gene sequences, eg, 16S, 18S, 23S, 28S rRNA or COI obtained from cultured or voucher-identifiable specimens. Organism cannot contain the term 'metagenome'.; [* B( M0 N6 Q- ~' K
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MIMARKS Survey related
7 w& H! w1 F3 i$ S) d# z; iUse for any type of marker gene sequences, eg, 16S, 18S, 23S, 28S rRNA or COI obtained directly from the environment, without culturing or identification of the organisms. Organism must be a metagenome, where lineage starts with unclassified sequences and scientific name ends with 'metagenome'.9 Z+ r& T6 u+ N0 D7 T+ h& e
8 q/ H& x z7 N; cMIMS Environmental/Metagenome4 F4 V$ _8 _$ @
Use for environmental and metagenome sequences. Organism must be a metagenome, where lineage starts with unclassified sequences and scientific name ends with 'metagenome'. L9 M- `* z- V. b) X
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MISAG Single Amplified Genome+ w: D+ ?" D9 N% D
Use for single amplified genome sequences produced by isolating individual cells, amplifying the genome of each cell using whole genome amplification, and then sequencing the amplified DNA. Organism cannot contain the term 'metagenome'.
3 b% D( D% i' H
?. n5 N4 {6 \- AMIUVIG Uncultivated Virus Genome. d/ Q9 ]% t! P" r$ G& c: ~9 d( O
Use for uncultivated virus genome identified in metagenome and metatranscriptome datasets. Organism must have lineage Viruses. |
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